CDS

Accession Number TCMCG057C10067
gbkey CDS
Protein Id XP_018471128.1
Location join(41586698..41586747,41586828..41586897,41587024..41587173,41587270..41587374,41587479..41587625,41587761..41587836,41588036..41588124,41588241..41588332,41588403..41588445,41588535..41588606)
Gene LOC108842645
GeneID 108842645
Organism Raphanus sativus

Protein

Length 297aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018615626.1
Definition PREDICTED: squalene synthase 1 isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category I
Description squalene
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00702        [VIEW IN KEGG]
R02872        [VIEW IN KEGG]
R06223        [VIEW IN KEGG]
KEGG_rclass RC00362        [VIEW IN KEGG]
RC00796        [VIEW IN KEGG]
RC02839        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01006        [VIEW IN KEGG]
KEGG_ko ko:K00801        [VIEW IN KEGG]
EC 2.5.1.21        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00100        [VIEW IN KEGG]
ko00909        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01130        [VIEW IN KEGG]
map00100        [VIEW IN KEGG]
map00909        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01130        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004310        [VIEW IN EMBL-EBI]
GO:0004311        [VIEW IN EMBL-EBI]
GO:0004659        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005789        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006644        [VIEW IN EMBL-EBI]
GO:0006694        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006721        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008202        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016125        [VIEW IN EMBL-EBI]
GO:0016126        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016765        [VIEW IN EMBL-EBI]
GO:0019637        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0042175        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044432        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045338        [VIEW IN EMBL-EBI]
GO:0051996        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0098827        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]
GO:1901617        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACCAGTTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAAGCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAATTTATTTCCAAGGAGGTAGAAACGGTTTATGATTATGATGAATACTGCCATTATGCAGCTGGACTAGTGGGTTTAGGTTTGTCGAAACTCTTGCTCGCTTCAGGATTAGAAATACTGACTCCAGACTGGAAGCAGATTTCCAATTCTACAGGTTTATTTCTCCAAAAAACAAACATTATCAAAGATTACCTTGAAGACGTTAATGAGATACCTAAACCACGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTAACAAGCTCGAGGAGTTAAAAAATGAGGAGAACTCAACAAAAGCAGTGCAGTGCTTGAATGAAATGGTCACTAATGCATTGATTCATGTTGAAGATTGCTTGAAATCTATGGCTGGATTGCGTGATCCTGCAATATTTAAGTCTTGTGCAATCCCACAGATTGTGGCGATTGGAACACTTGCATTGTGCTATAACAATGTACAAGTATTTAGAGGCGTCGTGAAACTCAGGCGAGGTCTAATTGCCAAAGTGATTGATCGCACAAAGACAATGGATGATGTCTATGGTGCATTCTATGATTTTTCTCACATGCTAAAGACAAAGGTGGACAAGAACGATCCAAATGCCATGAAAACGCTTCAACGACTGGAAACTATCGAGAAAGTCTGCAGAGAAAATGGAGACCTTCACAAGAGAAAATCTTACGTTAACGGCGAAACTCAATCAATGGCTCTCTTTATTCTAATGCTTGTGCCTCTACTGGCCATACTAGTCTTTGTGTATCTACAAGACCTCTCGAAGATTTTATAA
Protein:  
MDQFHHVSAAFLELEKGYQEAIEDITKRMGAGMAKFISKEVETVYDYDEYCHYAAGLVGLGLSKLLLASGLEILTPDWKQISNSTGLFLQKTNIIKDYLEDVNEIPKPRMFWPREIWGKYVNKLEELKNEENSTKAVQCLNEMVTNALIHVEDCLKSMAGLRDPAIFKSCAIPQIVAIGTLALCYNNVQVFRGVVKLRRGLIAKVIDRTKTMDDVYGAFYDFSHMLKTKVDKNDPNAMKTLQRLETIEKVCRENGDLHKRKSYVNGETQSMALFILMLVPLLAILVFVYLQDLSKIL